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Most Humans Part Neanderthal

Wednesday, May 12, 2010

The bombshell arrived with the May 7, 2010 issue of Science Magazine. Entitled "A Draft Sequence of the Neandertal Genome," it presented the years-long attempt of an international team of scientists to derive DNA from ancient female Neanderthal bones and determine if there was any genetic overlap with humans. The news was so sensational that the journal made the original scientific report and all collateral materials free to everyone, along with a podcast, multimedia presentation "The Neandertal Genome" and slew of links and forums for comments.

Read the original press release from the Max Planck Institute for Evolutionary Anthropology in Leipzig. It was embargoed for May 6, 2010, 8 p.m.

 

Svante Pääbo’s Neanderthal research group from left to right: Adrian Briggs, Hernán Burbano, Matthias Meyer, Anja Buchholz, Jesse Dabney, Kay Prüfer, Svante Pääbo, Janet Kelso, Tomislav Maričić, Qiaomei Fu, Udo Stenzel, Johannes Krause and Martin Kircher. (Copyright: Frank Vinken)

Some background

Discovered in a quarry in Germany in 1856, 40,000-year-old Neanderthal man became the first recognized early human fossil. The debate immediately began whether Neanderthals were a separate species or sub-species of Homo sapiens. German language orthographic reforms rendered the spelling of the name Neandertal in the twentieth century, although most people even today prefer to stick with the th of the original word. Neanderthals are named after the Neander Valley (German thal or tal) in which they first came to light.

More and more of them turned up over the years:  in Belgium (1886), a nearly complete skeleton in southern France (1908), Israel (then-Palestine, 1930) and Iraq (1953). The first ambitious genetic work was a partial sequencing of their mitochondrial DNA based on highly degraded specimens: Krings et al., Cell 90, 19 (1997). A second mitDNA sequence was achieved in 2000. The complete mtDNA sequence came in 2008:  Green et al., Cell 134, 416 (2008).

In the meantime, Neanderthals were found to have red hair and fair skin, body paint, customs, societies, rituals and art. They used fire, tools and weapons. They hunted bison, horses and other large animals and made bread of acorn meal. With their short arms and weak shoulder sockets, however, they probably could not throw spears. Before they were conquered by their smaller human cousins, they had colonized an area extending from Spain to Western Siberia and the Middle East. They were acclimated to northern Europe's icy temperatures and flourished especially before and during the last Ice Age. Then, suddenly, about 30,000 years ago, the fossil record goes silent. Their last holdout appears to have been in Spain.

Our picture of Neanderthals is likely to change radically now that we know they were among ancestors of ours, not a dead-end, primitive race. Some writers had already speculated, in fact, that Neanderthals were more advanced in many ways than their rivals, Cro-Magnon Man. Certainly, their religion was highly adumbrated. Some carried Venus figures on necklaces. According to the author of The Neanderthal's Necklace, Juan Luis Arsuaga (co-director of the World Heritage Site Sierra de Atapuerca in Spain), at one burial in Russia, a 60-year-old adult had 3,000 beads of drilled mammoth ivory sewn onto his clothes. A boy in the same burial wore a belt decorated with 250 arctic fox canines. There were also shells, armbands, head ornaments, bracelets, pendants, assegais, ceremonial staffs and other artifacts made of bone, antler, ivory and stone (p. 294).

The blockbuster draft of the Neanderthal genome just published noted genes linked to cognitive abilities, geo-spatial skills, language and motor coordination as well as strength, reproductive advantages and (what we knew already) cold adaptation. Much attention is likely to focus on the Neanderthal's signature occipital bun, noticed in isolated or vestigial populations like the Berbers, Saami, Canary Islands, Native Americans, Australian Aborigines and Melungeons. These populations probably preserved greater proportions of Neanderthal admixture than others.

Because the genetic legacy of Neanderthals (so far) has not been detected in the mitochondrial record, it is believed that gene flow came from males mating with human females. No male Neanderthal lines survive -- not surprisingly. Only autosomal DNA reveals the Neanderthal contribution to human populations.


Comments

Anonymous commented on 18-May-2010 03:09 PM

This comment is also directed to a Melungeon list and some friends of mine. I have no financial interest in Don's consulting business. He is a cousin/mentor/friend and I have used his services for several items with very satisfying results.

Don sent my Neanderthal Index points to me.

Here is Don's analysis of my RESULTS:

Interpretive Analysis and Result
On an averaged basis for aggregate world populations, the subject’s top matches are Saharawis and other North African populations. The subject, on average, has thirteen times the probability of having genetic relatives in Archaic populations than British and Swedish, the least likely European populations to have Neanderthal admixture. Descending below the top tier matches, other Archaic populations like Native American and Australian Aboriginal are still two to three times stronger than Northern European such as British. Because of high matches with Berbers, India and the Middle East, but lacking strong Finno‐Uralic matches, the subject has an estimated Neanderthal Index of 3.5 or High on a scale of 0.1 to 5.0.

I think this is very interesting. I have a huge occipital bun among other traits. My father's was larger than mine.

Love
Nancy


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Autosomal DNA Testing is Newest Wave

Wednesday, April 07, 2010

DNA Consultants’ 18 Marker Ethnic Panel Reveals Native American, Jewish, Other Hard-to-Find Lines in Your Family Tree

PHOENIX – (April 7, 2010) – The market leader in autosomal DNA testing for ancestry, DNA Consultants announced that it has introduced the latest enhancement to its DNA Fingerprint Test™ ancestry tool. The add-on to its popular all-in-one ancestry tracing product is called the 18 Marker Ethnic Panel and sells for $50.00.

“With the 18 Marker Ethnic Panel, you can easily verify Native American, Ashkenazi Jewish, African and other ethnic lines that may be hidden in your family tree,” said Donald Yates, the company’s founder and principal scientist. “If you get a check mark for Native American marker I or II from either parent, you have Native American ancestry…it’s that simple.”

Like the DNA Fingerprint Test upon which it is based, the 18 Marker Ethnic Panel uses the same unique DNA profile familiar from television police shows like CSI. The markers were discovered by the company last August after statistical validation showing they reflected population splits in early human migrations.

“We’re not talking about ancient history,” said Yates. “These markers reflect recent genetic contributions to your overall ethnic mix within a relatively shallow time frame of about the last ten generations.” The reason, he said, was that Native American and the other types of DNA are “so distinctive their genetic signature lasts and never completely goes away.”

The 18 Markers include tell-tale evidence for Native American, Mediterranean, East European, Ashkenazi Jewish, Sub-Saharan African, Asian and several other definitive ethnic groups.

 “The test doesn’t tell you how much of that ancestry you have,” Yates added. “It only tells you if you have it, even if it is a minor line.” The panel also reports whether you have a given ethnic heritage from one parent or both.

To obtain the 18 Marker Ethnic Panel you must first order or submit results from a DNA Fingerprint Test. The core test is a comprehensive analysis of all your ancestral lines and gives you matches to populations and countries around the world where you have accumulations of ancestry. It sells for $250.00. Combined with the new 18 Marker Ethnic Panel, the test is called DNA Fingerprint Plus and costs $300.00.

Order online at dnaconsultants.com or call toll free 1-888-806-2588.

For more information, maps and sample report, visit DNA Consultants’ product page for the DNA Fingerprint Plus at:

http://dnaconsultants.com/_product_60282/DNA_Fingerprint_Plus.

DNA Consultants’ complete and total ancestry analysis is based on human prehistory but detects recent ethnic contributions to your DNA.

Donald Yates discovered

new DNA markers in 2009.

NATIVE AMERICAN I

NATIVE AMERICAN II (Hispanic)

EUROPEAN I ( Mediterranean )

EUROPEAN II

EASTERN EUROPEAN I

EASTERN EUROPEAN II

ASHKENAZI JEWISH I

ASHKENAZI JEWISH II

ASHKENAZI JEWISH III

TATAR/KHAZAR

ASIAN I

ASIAN II

SUB-SAHARAN  AFRICAN I

SUB-SAHARAN AFRICAN II

SUB-SAHARAN AFRICAN III

SUB-SAHARAN AFRICAN IV

AUSTRALOID/SOUTHEAST ASIAN 

FINNIC/URALIC

Ethnic admixture markers included in the DNA Fingerprint Plus 18 Marker Ethnic Panel range from Native American to Sub-Saharan African.

Press Release dated April 7, 2010

DNA Consultants

Home of the DNA Fingerprint Test

26438 N. 42nd Way

Phoenix, AZ 85050

Tel. (480) 292-9820

Website:  www.dnaconsultants.com

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Archeology from Non-Archeology

Wednesday, April 07, 2010

The explosion in commercial archaeology has brought a flood of information. The problem now is figuring out how to find and use this unpublished literature, reports Matt Ford in the current issue of Nature magazine.

"I became aware that what I was teaching would be out of date without looking at the grey literature (unpublished reports)," says one professor at the University of Reading in England.

A policy shift in 1990 required all construction projects to document archaeological remains in Britain and generated an avalanche of findings that cannot be absorbed by the official academic field. The result is that our picture of the past is very much outdated. Academia is not likely ever to get caught up. Nor are academicians ever likely to warm to new theories of population genetics like diffusionism and trans-Oceanic contact and colonization, since few of those theories ever received a hearing in the halls of academe in the first place.

Read the full story in Nature, "Archaeology:  Hidden Treasure."

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Hunter Gatherer DNA from the Don

Saturday, January 09, 2010
The successful extraction of ancient DNA has been a rare accomplishment in genetic circles until recently. In the journal Current Biology, a German-Russian team details how it was possible to avoid the common pitfalls of contamination with modern human DNA in the instance of a 30,000 year-old hunter gatherer's grave in Russia. Svante Paabo, from the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, and colleagues used the latest DNA sequencing techniques to study genetic information from human remains unearthed in 1954 at Kostenki, Russia. According to a report by the BBC, the hunter gatherer's mitochondrial DNA type was U2. Haplogroup U is seen as a predecessor dominant type among Europeans before the arrival of agriculture and Middle Eastern culture about five to seven thousand years ago. It is hoped the new expertise will help unlock the secrets of other examples of ancient DNA.

Title and authors of the article:  A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia, by Johannes Krause, Adrian W. Briggs, Martin Kircher, Tomislav Maricic, Nicolas Zwyns, Anatoli Derevianko and Svante Pääbo 

Summary The recovery of DNA sequences from early modern humans (EMHs) could shed light on their interactions with archaic groups such as Neandertals and their relationships to current human populations. However, such experiments are highly problematic because present-day human DNA frequently contaminates bones. For example, in a recent study of mitochondrial (mt) DNA from Neolithic European skeletons, sequence variants were only taken as authentic if they were absent or rare in the present population, whereas others had to be discounted as possible contamination. This limits analysis to EMH individuals carrying rare sequences and thus yields a biased view of the ancient gene pool. Other approaches of identifying contaminating DNA, such as genotyping all individuals who have come into contact with a sample, restrict analyses to specimens where this is possible and do not exclude all possible sources of contamination. By studying mtDNA in Neandertal remains, where contamination and endogenous DNA can be distinguished by sequence, we show that fragmentation patterns and nucleotide misincorporations can be used to gauge authenticity of ancient DNA sequences. We use these features to determine a complete mtDNA sequence from a ∼30,000-year-old EMH from the Kostenki 14 site 

Kostenki 14 (Vladimir Gorodnianskiy)
Reconstruction of the hunter gatherer.  Courtesy BBC News.
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