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Most Humans Part Neanderthal

Wednesday, May 12, 2010

The bombshell arrived with the May 7, 2010 issue of Science Magazine. Entitled "A Draft Sequence of the Neandertal Genome," it presented the years-long attempt of an international team of scientists to derive DNA from ancient female Neanderthal bones and determine if there was any genetic overlap with humans. The news was so sensational that the journal made the original scientific report and all collateral materials free to everyone, along with a podcast, multimedia presentation "The Neandertal Genome" and slew of links and forums for comments.

Read the original press release from the Max Planck Institute for Evolutionary Anthropology in Leipzig. It was embargoed for May 6, 2010, 8 p.m.

 

Svante Pääbo’s Neanderthal research group from left to right: Adrian Briggs, Hernán Burbano, Matthias Meyer, Anja Buchholz, Jesse Dabney, Kay Prüfer, Svante Pääbo, Janet Kelso, Tomislav Maričić, Qiaomei Fu, Udo Stenzel, Johannes Krause and Martin Kircher. (Copyright: Frank Vinken)

Some background

Discovered in a quarry in Germany in 1856, 40,000-year-old Neanderthal man became the first recognized early human fossil. The debate immediately began whether Neanderthals were a separate species or sub-species of Homo sapiens. German language orthographic reforms rendered the spelling of the name Neandertal in the twentieth century, although most people even today prefer to stick with the th of the original word. Neanderthals are named after the Neander Valley (German thal or tal) in which they first came to light.

More and more of them turned up over the years:  in Belgium (1886), a nearly complete skeleton in southern France (1908), Israel (then-Palestine, 1930) and Iraq (1953). The first ambitious genetic work was a partial sequencing of their mitochondrial DNA based on highly degraded specimens: Krings et al., Cell 90, 19 (1997). A second mitDNA sequence was achieved in 2000. The complete mtDNA sequence came in 2008:  Green et al., Cell 134, 416 (2008).

In the meantime, Neanderthals were found to have red hair and fair skin, body paint, customs, societies, rituals and art. They used fire, tools and weapons. They hunted bison, horses and other large animals and made bread of acorn meal. With their short arms and weak shoulder sockets, however, they probably could not throw spears. Before they were conquered by their smaller human cousins, they had colonized an area extending from Spain to Western Siberia and the Middle East. They were acclimated to northern Europe's icy temperatures and flourished especially before and during the last Ice Age. Then, suddenly, about 30,000 years ago, the fossil record goes silent. Their last holdout appears to have been in Spain.

Our picture of Neanderthals is likely to change radically now that we know they were among ancestors of ours, not a dead-end, primitive race. Some writers had already speculated, in fact, that Neanderthals were more advanced in many ways than their rivals, Cro-Magnon Man. Certainly, their religion was highly adumbrated. Some carried Venus figures on necklaces. According to the author of The Neanderthal's Necklace, Juan Luis Arsuaga (co-director of the World Heritage Site Sierra de Atapuerca in Spain), at one burial in Russia, a 60-year-old adult had 3,000 beads of drilled mammoth ivory sewn onto his clothes. A boy in the same burial wore a belt decorated with 250 arctic fox canines. There were also shells, armbands, head ornaments, bracelets, pendants, assegais, ceremonial staffs and other artifacts made of bone, antler, ivory and stone (p. 294).

The blockbuster draft of the Neanderthal genome just published noted genes linked to cognitive abilities, geo-spatial skills, language and motor coordination as well as strength, reproductive advantages and (what we knew already) cold adaptation. Much attention is likely to focus on the Neanderthal's signature occipital bun, noticed in isolated or vestigial populations like the Berbers, Saami, Canary Islands, Native Americans, Australian Aborigines and Melungeons. These populations probably preserved greater proportions of Neanderthal admixture than others.

Because the genetic legacy of Neanderthals (so far) has not been detected in the mitochondrial record, it is believed that gene flow came from males mating with human females. No male Neanderthal lines survive -- not surprisingly. Only autosomal DNA reveals the Neanderthal contribution to human populations.


Comments

Anonymous commented on 18-May-2010 03:09 PM

This comment is also directed to a Melungeon list and some friends of mine. I have no financial interest in Don's consulting business. He is a cousin/mentor/friend and I have used his services for several items with very satisfying results.

Don sent my Neanderthal Index points to me.

Here is Don's analysis of my RESULTS:

Interpretive Analysis and Result
On an averaged basis for aggregate world populations, the subject’s top matches are Saharawis and other North African populations. The subject, on average, has thirteen times the probability of having genetic relatives in Archaic populations than British and Swedish, the least likely European populations to have Neanderthal admixture. Descending below the top tier matches, other Archaic populations like Native American and Australian Aboriginal are still two to three times stronger than Northern European such as British. Because of high matches with Berbers, India and the Middle East, but lacking strong Finno‐Uralic matches, the subject has an estimated Neanderthal Index of 3.5 or High on a scale of 0.1 to 5.0.

I think this is very interesting. I have a huge occipital bun among other traits. My father's was larger than mine.

Love
Nancy


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Neandertals Had Symbols, But Did They Use Human Language?

Thursday, January 14, 2010
Neandertal Jewelry Shows Their Symbolic Smarts

Michael Balter

Science 15 January 2010:
Vol. 327. no. 5963, pp. 255 - 256
DOI: 10.1126/science.327.5963.255

A handful of marine mollusk shells, possibly used as necklaces and paint cups, shows that Neandertals expressed themselves symbolically, say the authors of a paper published online this week in the Proceedings of the National Academy of Sciences. They argue that the findings suggest that social and demographic factors, rather than cognitive differences, best explain why so-called modern behavior was relatively rare among Neandertals.

Read abstract.

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Hunter Gatherer DNA from the Don

Saturday, January 09, 2010
The successful extraction of ancient DNA has been a rare accomplishment in genetic circles until recently. In the journal Current Biology, a German-Russian team details how it was possible to avoid the common pitfalls of contamination with modern human DNA in the instance of a 30,000 year-old hunter gatherer's grave in Russia. Svante Paabo, from the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, and colleagues used the latest DNA sequencing techniques to study genetic information from human remains unearthed in 1954 at Kostenki, Russia. According to a report by the BBC, the hunter gatherer's mitochondrial DNA type was U2. Haplogroup U is seen as a predecessor dominant type among Europeans before the arrival of agriculture and Middle Eastern culture about five to seven thousand years ago. It is hoped the new expertise will help unlock the secrets of other examples of ancient DNA.

Title and authors of the article:  A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia, by Johannes Krause, Adrian W. Briggs, Martin Kircher, Tomislav Maricic, Nicolas Zwyns, Anatoli Derevianko and Svante Pääbo 

Summary The recovery of DNA sequences from early modern humans (EMHs) could shed light on their interactions with archaic groups such as Neandertals and their relationships to current human populations. However, such experiments are highly problematic because present-day human DNA frequently contaminates bones. For example, in a recent study of mitochondrial (mt) DNA from Neolithic European skeletons, sequence variants were only taken as authentic if they were absent or rare in the present population, whereas others had to be discounted as possible contamination. This limits analysis to EMH individuals carrying rare sequences and thus yields a biased view of the ancient gene pool. Other approaches of identifying contaminating DNA, such as genotyping all individuals who have come into contact with a sample, restrict analyses to specimens where this is possible and do not exclude all possible sources of contamination. By studying mtDNA in Neandertal remains, where contamination and endogenous DNA can be distinguished by sequence, we show that fragmentation patterns and nucleotide misincorporations can be used to gauge authenticity of ancient DNA sequences. We use these features to determine a complete mtDNA sequence from a ∼30,000-year-old EMH from the Kostenki 14 site 

Kostenki 14 (Vladimir Gorodnianskiy)
Reconstruction of the hunter gatherer.  Courtesy BBC News.
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Halloween Story: Shades of Peking Man

Friday, October 30, 2009
Scary Findings in Guangxi Region


In a report published in the October 30 number of Science, Chinese paleoanthropologists claimed that the jawbone and teeth unearthed by them recently in the southern province of Guangxi represent a form of man 100,000 years old. Their interpretation of the fossil challenges the Western theory that claims our ancestors peopled the world in a migration out of Africa late in the last Ice Age, about 50,000 years ago. But there is more. American and European scientists stand to lose even more face if China's insistence is true that this early human is a hybrid with H. erectus, a more primitive species also known as Peking Man.

Discoverer Jin Changzhu pointed out that the jawbone curved outward, whereas that of the older species of H. erectus had an inward-sloping chin, and modern human chins generally fut out father than the Guangxi specimen's. Such an intermediate chin, he said, suggested interbreeding with H. erectus

In the West, paleoanthropologists and geneticists for the most part vehemently deny that any interbreeding between species of man could have taken place before our type emerged as the sole and supreme species favored by evolution. Neandertals, they claim, were replaced by modern humans in Europe and died out without a trace in the genetic record about 30-40,000 years ago. 

"The initial publication makes shaky claims based on preconceptions," scoffed Tim White, a paleoanthropologist at the University of California, Berkeley.

The title of the report is "Signs of Early Homo sapiens in China?" It was written by Richard Stone and published on page 655 of Vol. 326, no. 5953, of Science.

The confrontation reminds many of the battle over Peking Man dated to about 500,000 years old. At first, the Chinese maintained that East Asian people were descendants of Peking Man (and not of Africans or out-of-African humans). Later, they modified their view and held that modern Asians represent a hybridization with Peking Man. Possibly all the "races" or continent-specific forms of modern man are the result of anatomically modern humans interbreeding with more primitive hominids in their part of the world. 

We wonder why Western scientists are in such a huff about the conclusions of Chinese paleontologists since there is solid proof of admixture between modern humans and archaic human groups like Neandertals, Homo erectus and Homo floresiensis (the fossils of "hobbits" discovered in Indonesia in 2004). One instance among many of publications demonstrating this possibility is:  Jeffrey D Wall, "Detecting Ancient Admixture and Estimating Demongraphic Parameters in Multiple Human Populations," Molecular Biology and Evolution, vol. 26, no. 8 (August 2009), pp. 1823-27.

Perhaps the right hand of genetics doesn't know what the left hand of anthropology is doing or saying in this country.


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